rs50737905 SNP Detail

Summary

• ID
  rs50737905
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTATAGA AAACGCTACC
  GATTGTACGT CTTGACTAAT GGTTAAACTT ACTTTTATGT GGGTATCACC TTTGAAGCTG
  TACACCATAG TGATTAGGAC TACCGTCTGT GGATCTGATA ATCATAGGCT CAAACCTCAG
  AGCTGTGCCC CTCACTTGTG TGACCTTAGA CTCTCAAGGA CTCCTTTTCC CTGTTTGTGG
  R
  ATAGAGACAC TCGGGTCCTG CCTGTATGCT CTTGGGGAGT ATCTTGTGCT GCCCCACCAT
  CATGAACTCA GATCAGGATT TCCCAGTAGC CTGTGTGTGC AGTTGCTCAG AGCAGAAAAG
  GGGAAAGAAA GCGCTTGGAG GTAGAGCAGT GTTGAGAGGG GAGTGCAGGT GGGTTTACTC
  TATCCTCCCA TCGCCTGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147115214	ENSMUSSNP937518	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320438731	CHEV_2_102389342	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50737905					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379530 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	581 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	827 bp upstream
Rr561703	regulatory region 561703	446 bp proximal
Rr561704	regulatory region 561704	1718 bp proximal
Tssr19094	transcription start site region 19094	860 bp upstream
Tssr19095	transcription start site region 19095	914 bp upstream
Tssr19096	transcription start site region 19096	932 bp upstream
Tssr19097	transcription start site region 19097	953 bp upstream