rs50736428 SNP Detail

Summary

• ID
  rs50736428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141927862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTGTGTG TGTGTGTCTG
  TCTGTGTGTG TCTGTGTGTG TGTGTCTGTG TGTACATGCA CAAAAATGTG TATGCACACA
  TGCCACAGTA TGTGAAGATC AGAGAACAAG TTGCTGGAAT AGATTCCCTC TTTCCACAGT
  GTGAGCTGAG CCCTAAGACT GGACTCACTC ATTAGTCTTG GCAGCATGTG ACCTGACCCA
  Y
  GGAGACACAT CACCTGCTTA GTCTTCTCTA CATTCTACTC TGCACCACAA CGTTGTCATA
  AATCCTCCCC ACCCCCTGCA ACTATGTTCA CAGAGAGGTC TTCACCTTTA TAAGCATTGT
  GGGCAGAGGA TAACATCTGT AATTAGTCTA CTCTTCGTAG GGAATATCTT TTTAAAATTA
  GATCGCTTCC CTTTTTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61088227	NES16613376	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50736428					SNP	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61088227	NES16613376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141927862 () rs orientation: forward

Symbol	Name	Function Class
Rr586397	regulatory region 586397	489 bp proximal
Rr586398	regulatory region 586398	746 bp proximal