rs50735612 SNP Detail

Summary

• ID
  rs50735612
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37433267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCGAGT AGAACTGTGC
  CAATCTCCAA TATTGACTCT TCAAGTGCTT TCAGTTCAAT GTATTCCTTT CAAAGAGCCT
  GCAGTGTCCT CACAGTTCTG GTCATATAAA TCTCACTTAT CCTGTTCCTC ACCTCAAGAA
  CCGCATTTGT CGTTTTCTGC TTTATTTACA GAACCTAAAA CTAGAGTCTG TCAGCCAGAA
  Y
  AAGGCGGTGA TTGAGAATCT CATCCGCAAA AAGCAAAGTA AGGGAGAAAG GGGTCCTTTG
  GGCTTATGGT TCAGAGGGGA CACGGTCATC GTGGTGAGCT AGCAGAGCAG TCGAGGTGTG
  AGGCCTGGCA GTCAGGAAAG AGAGGTCATA TCTCATCTTC ATACAAAAAG CAGGACAGGA
  AGTAGGGTCA GACTCTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134804185	ENSMUSSNP1636120	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50735612					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37433267 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fgf2	fibroblast growth factor 2			Intron
				Noncoding-Transcript-Variant
Gm43439	predicted gene 43439			within coordinates
Rr575470	regulatory region 575470			183 bp distal
Rr575471	regulatory region 575471			276 bp proximal
Rr575472	regulatory region 575472			1147 bp proximal