rs50730643 SNP Detail

Summary

• ID
  rs50730643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144679099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTCTAAG CCCAGGAAGC
  AAAAAAGGAC TCTTGAGAGG GAAAGAGGAC TTAAGGGAAA AGGGAATAAT AGAACACATA
  TAATATGAAG ATGGCAGGGC TATGGGGTGA AGGGTGGAAT ACTGAGAGTT AATGGTTTAA
  CCAGGGACAA GGGGTGTATG GGGGAGAAGA AGGTGAGGGT AGGTTAATCA AAAGTAAAAA
  Y
  ATATGAAAAC CCTCTATAGG AATCCATACT TTGTAAACTA ATTAAAAATA TAATTTAAAA
  GTAGTTGGAG GTGCAACATA AAGTTCCTAC ATAGAGGAAC AATGATTCCC AAAGAAGACA
  TAAGTTCTTA AATGAAAATA TCAGTACTAG GTGTGGGATA TCCCTTTAGG AGTCATTGGT
  CAAGGAGACC GAGAAACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147841546	ENSMUSSNP6304608	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321411036	CHEV_4_144542432	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50730643					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144679099 () rs orientation: forward

Symbol	Name	Function Class
Gm42344	predicted gene, 42344	within coordinates
Gm69556	predicted gene, 69556	within coordinates
Rr604271	regulatory region 604271	1757 bp distal
Rr604272	regulatory region 604272	334 bp distal
Rr604273	regulatory region 604273	1104 bp proximal