rs50729939 SNP Detail

Summary

• ID
  rs50729939
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68947801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCTCCCAC AGGCTGCACA ATCTCTCCAA CAGTGCTACC
  ACCTGGGGAC TATGTGTTCA TCTCAAATGC CTACGGAACC CATGGGGGGA CATTTTCACC
  S
  AAGCCACCAC ACCTAGCAAC CAGATGCTAT GGAAAAAGTG GGGGCTAACT GGTTTTTTAA
  AAACAGCACT AAGATGCCAG ACATACTAGT AAAAAGTCT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135264661	ENSMUSSNP6805884	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320791791	CHEV_3_68844390	CHEVERUD	SCREENING_POP	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50729939					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68947801 () rs orientation: forward

Symbol	Name	Function Class
Rr578115	regulatory region 578115	within coordinates
Rr578116	regulatory region 578116	905 bp proximal
Rr578117	regulatory region 578117	1744 bp proximal
Trim59	tripartite motif-containing 59	Intron