rs50727816 SNP Detail

Summary

• ID
  rs50727816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124019882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGACATA GTTTTAATAG
  ACTAAAGCTT CAGCAACTGA AGAGATGACT CAGTGCTCAA GCAATTGTTC TTGCATACGA
  TCCAGGTTCC TCCCCAGGCA CCCACAAAGT GGTTCACAAC CATCTGTAGC TAAAGTTCCA
  CGGGATCAGG TGCCCTCTTC TGTCCACTGT GGGCACTGCA CACATGCAGT GCACAGACAT
  R
  CACGCAGGCA ATGCTCGTAT TACACATAGA ATAAAATAAA CCTAAAATAG AAGAAAATTA
  CAAAGAATAT AGCTTTAGTT TTCCCATAAC TTTACCACAA AATAATAAGT TTAAATCACA
  TCTTCATGAA CAAATACTTT CTTCTCAAAC AAAAAGTCAG CATCTATCAT GATGAATTTT
  GAATCATACT TGTGTTGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135782601	ENSMUSSNP2939134	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320926410	CHEV_3_123929151	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50727816					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124019882 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	33 bp distal