rs50724430 SNP Detail

Summary

• ID
  rs50724430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108448547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTTTAA TAAATTCATA
  AATATTCTTA TGCATGCACA GTTCTAATTA GTATGGGTGG CATTAGCTAC TTTTCTTATT
  TCTGTGGCAA AGGACCTGAC ACAAACAACC TAAGACAAAC CAGGCTTATG CAGAGCAGGC
  TTCGAGGTTG TAGTTGTCAC GGAGGGAAGG CCTGGCGGCA GGGATGTGAA GCAACTGATC
  R
  CACTGCATCC CCAGTCTGCA AGCAGAGTGG ATTCTCGGCT CCTTCTCATT CAAGTCTCAG
  CACCAGCTGA GGAAATGGTG CCACTCACAT TCGGGGTTAT TCTTCATACA TCAGTTAACC
  TCATCAAGAA ACTCCCTCAG AGATAAGCGC AACGTTGTGT TTCTGTGGCA ACACTAAATC
  GCATCAAGTT GGCATTCGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133503041	ENSMUSSNP1123002	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50724430					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108448547 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Gm44101	predicted gene, 44101	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636115	regulatory region 636115	524 bp proximal
Rr636116	regulatory region 636116	946 bp proximal
Rr636117	regulatory region 636117	1229 bp proximal
Tssr58061	transcription start site region 58061	1447 bp upstream
Tssr58062	transcription start site region 58062	1481 bp upstream
Tssr58063	transcription start site region 58063	1498 bp upstream
Tssr58064	transcription start site region 58064	1529 bp upstream
Tssr62385	transcription start site region 62385	63 bp downstream
Tssr62386	transcription start site region 62386	950 bp downstream