rs50723160 SNP Detail

Summary

• ID
  rs50723160
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36118419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCACTTTC ATGTATTTTA
  GTTAGTTCCC ACTACATTAG GTGATTTATT CCATGTTCTA TTGCTGTGAA GAGACATTGT
  GATCAAGGTG ACTCTTAAGA AAGAAAGCAA CACTGGCAGG ACACATTCGT GTGAACGGGA
  CTCCTGGGTC ACCTGGAGAT CTCAGATCGA TGGAACAGAG GCTACAGTAC TGACGCTAAC
  S
  TTTCAAGAGG CAGTCTGTGG GCTAGCAAGA CGGCTTAGTG AGTGAAGTCG CTTGCCACAA
  AGCCTGGAGA TCCGGGTCCA ATACTTGAGA AGCTATCTTC TGACCTCCAC ACATGTGCCT
  AGTATACTCT TTCTCTTACA CAGATAGATA GATAGATAGA TAGATAGATA GATAGATAGA
  TAGATAGATA TTTTTTAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60388001	NES15892864	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50723160					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60388001	NES15892864	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36118419 () rs orientation: forward

Symbol	Name	Function Class
Acad9	acyl-Coenzyme A dehydrogenase family, member 9	1709 bp upstream
Cpgi13079	CpG island 13079	1598 bp proximal
Rr397642	regulatory region 397642	276 bp upstream
Rr575304	regulatory region 575304	279 bp proximal
Rr575305	regulatory region 575305	911 bp proximal
Rr575306	regulatory region 575306	1091 bp proximal
Rr575307	regulatory region 575307	1219 bp proximal
Tssr28859	transcription start site region 28859	1714 bp upstream
Tssr28860	transcription start site region 28860	1776 bp upstream
Tssr28861	transcription start site region 28861	1794 bp upstream
Tssr28862	transcription start site region 28862	1841 bp upstream