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rs50718099 SNP Detail
Summary
  • ID
    rs50718099
  • Variation Type
    SNP
  • Alleles
    T
Genome Location and Flanking Sequence
  • Location
    Chr3:36665832 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTTTC CATGGTACAC AGAGTGAATT
    T
    TTACCAAAAA TGGAGTGTTT GTTTT                                      
    
    T = T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
LG/J
SM/J
ss134784740 ENSMUSSNP3230114 ENSEMBL ENSEMBL_Sanger f SNP T T
ss320703484 CHEV_3_36510605 CHEVERUD SCREENING_POP f SNP T T
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
LG/J
SM/J
rs50718099 SNP T T T T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:36665832 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bbs7 Bardet-Biedl syndrome 7 Intron
Cpgi13088 CpG island 13088 1413 bp proximal
Rr575383 regulatory region 575383 938 bp proximal
Rr575384 regulatory region 575384 1592 bp proximal
Rr575385 regulatory region 575385 1745 bp proximal
Tssr28874 transcription start site region 28874 1799 bp upstream
Tssr33039 transcription start site region 33039 1656 bp downstream
Tssr33040 transcription start site region 33040 1687 bp downstream
Tssr33041 transcription start site region 33041 1735 bp downstream
Tssr33042 transcription start site region 33042 1778 bp downstream
Tssr33043 transcription start site region 33043 1806 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory