rs50714078 SNP Detail

Summary

• ID
  rs50714078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151475329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAGATGG CGGAAGCAGG
  CCACTGGTAA TGGACCTTGG AAGACTTTAT CTTGTCCCCA GCTCTCCTCA GGCACCATGA
  TACAAGCAGT TCTGTTCCAC AATGCTCTCC TTGGCATGAG TTCAGCTGCC CCACAAGCTC
  ACAGATTATT ATGGACCATG ATCCAAAGTA AATCTTTCTT CAAGTTCCTT TCCTAACCCA
  Y
  TTTGTCACAG TATAGGGAAT CTTACTATTG CAGTACATAA TGACACATAA AGGTCATTGC
  TGAGGTAGAA TTCCCATCTC AAAATCCAGA CCATCAAGTC TAGAGATGCC AAGTCTTATG
  TGAAATGACC ATGCAGCTGA CTAGAGTCCC CTGAAAATGG CAATTATTTC CCAATCCTGT
  TGCTAAGCCA AAGAAGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61100552	NES16600310	PERLEGEN	MM_PANEL2	f	SNP			T	C	T	T		T	T		T
ss136097999	ENSMUSSNP3324341	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321026835	CHEV_3_151432656	CHEVERUD	SCREENING_POP	f	SNP							C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs50714078					SNP	C	C	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61100552	NES16600310	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151475329 () rs orientation: forward

Symbol	Name	Function Class
Rr587415	regulatory region 587415	1346 bp proximal
Rr587416	regulatory region 587416	1493 bp proximal
Rr587417	regulatory region 587417	1604 bp proximal