rs50711109 SNP Detail

Summary

• ID
  rs50711109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159429465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATCAGCA GTCATTTGGG
  GAAAGCTCTC AGAGTCAACT ATTTCTCCTC AGGGTGTGAT CTCTACTCAG TAGGTGCCTC
  TTAAGAAAGC AGCAGCTGTC TGAAGGATGT GGGTGACAGA TTTGAACAAA CCCCTGTTGC
  TTTCTCTTGT AAACAGTGTA TTCCTGTGAG GGATCTTGGG TAGATGCATC CCTCCCTCCT
  R
  GTGCACCTTG GGTCTGATTT GTTGTTGTCT GTGAGACCAG GAACCCCATG GATATGACAG
  AGAGCTACCT GCTCCTGAGT CTGAGCCTCC GACTGGATCC CCACCAGGGC TCTGTCCTTG
  ATATCTGTCT GGCAGAGTTA GCCTTTCTCT GAGAAGACTA CCTGTGAATA CAGTTTGCAC
  CTGCTTTGTT TAGGGTGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148134183	ENSMUSSNP2504919	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50711109					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159429465 () rs orientation: forward

Symbol	Name	Function Class
D2Mit411	DNA segment, Chr 2, Massachusetts Institute of Technology 411	1015 bp distal
Rr568924	regulatory region 568924	774 bp distal
Rr568925	regulatory region 568925	475 bp distal
Rr568926	regulatory region 568926	142 bp distal