rs50710252 SNP Detail

Summary

• ID
  rs50710252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141747728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGTAAGT CGCATTTCAT
  GGGCTGGACT ATGAAGTTAC TTCTTATTCA AATAAAGGCG TATTAAGGAA CCACCCAGAG
  ATAAAGCCTT GTCTTCTTGA ACTCATTTGC TATGTATACA GTGAATAAGA GTATGCTCTA
  TAAACAGCAG AGATTATACT ATATACTGTA ACTGAGCTGA AAGTCTCCCT TGGGCACAGC
  R
  ATGCATAAAT GATTGTCACA GCTATCTCGC TAGTTCAGAT CCTGCAATCT TATAACCAAC
  TTCTGAAGGA CAAAAATGAT ACTTTGGCTA AGAAAACAGT AACCAACCAT TTAAATCTGT
  TCTACGGTGT GAAGAATCAA ACTAATTTAG CCCTTCACAT ATATGTTTTA CTTATAGTTC
  ACTTTACATA TCACTCAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61089245	NES16604375	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	A	G	G	G	A		G	G	G	G		G
ss136009884	ENSMUSSNP2498325	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss320997879	CHEV_3_141704931	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50710252					SNP	A	A	A	G	A	A	A	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61089245	NES16604375	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141747728 () rs orientation: forward

Symbol	Name	Function Class
Bmpr1b	bone morphogenetic protein receptor, type 1B	Intron
D3Mit160	DNA segment, Chr 3, Massachusetts Institute of Technology 160	353 bp distal
D3Mit160.2	DNA segment, Chr 3, Massachusetts Institute of Technology 160.2	221 bp distal
Rr586379	regulatory region 586379	1601 bp proximal