rs50706997 SNP Detail

Summary

• ID
  rs50706997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121653312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCAAAGG CAAATTATTC
  CCAATGGAGA TTATTGCTAC TTGTCTCATA TTTCTTTTTA AATTTTGTTT ACTGTCTTTA
  AACACAGATG TTTTGCTCTG TGAATATAGC CCCCGGTATA GCTCTAAGCT TTTGCTGCAG
  GATAAACTCC CCTTTATCTC AGGATTTGTA AGACCACTGT ATAAACTTTA TGTATCTCTC
  Y
  AGATTTATAA ATTCATTGGG TGTGGTTTAG AAGGTCTGTA AACTCTAACA AAACGTTAGC
  TTAAAACTTG TAATAGAAAT GGTTGATTTC ATATATATAT ATATATATAT ATATATATAT
  ATATATATAT ATATTTGCTA TAGCATGCTT GTATGTAACT TGGATTCAAC TCCTGTTTAA
  GAAAATAGAT ATATTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135730617	ENSMUSSNP7024718	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320906454	CHEV_3_121562581	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50706997					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121653312 () rs orientation: forward

Symbol	Name	Function Class
Rr584185	regulatory region 584185	211 bp distal