rs50702205 SNP Detail

Summary

• ID
  rs50702205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135107743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGGTGCCTT TGACCTCACA GCTCTCCTAG
  GACGTGCAGG CCCTAGGCAG GGAGGTGGAG AGTCAATAGA AGCATGGTTT AGTGTCCCTT
  TCCCAGGCCT TCCTCTGGCC ACAAGTCGTC CATCACTAGC AGCTGACGTT ACCCACCCAG
  R
  AGGGTCTCCA GAAAGAGGCA GAAGCCGACA ttatgttgtt ttgagacagg atctcactat
  tatatagccc tggctggcct ggaactcact atgcagagca gtctgacctc agactgacag
  gagatctacc tgcttctgtt tcctgagggc                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145526753	ENSMUSSNP5428342	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss319988322	CHEV_1_137076582	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50702205					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135107743 () rs orientation: forward

Symbol	Name	Function Class
Rr419094	regulatory region 419094	74 bp distal
Rr419095	regulatory region 419095	657 bp proximal
Tssr13831	transcription start site region 13831	881 bp downstream