rs50698707 SNP Detail

Summary

• ID
  rs50698707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:155236103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTAATTT CTTCAGCATG
  AACTTGTGAA ATTCCAAGCA ATATTTTAAG CACTCAAAGT TAGCTTCTAA ATAAATTTCC
  AACTGAGAAA TTCACATTTT ACCATTTCTA GTAAGTTCAG TATTTTTGCC AAATGTTGGA
  TAAATTATAT TTGGTTAGAT CAAGTAGATT GTATAAAATA TTTTAAAACC TTAATAATTA
  Y
  TACACAAAGT AGAATAGCAG TAACAATGAC AATATACATG TATATATGTA TATATATAGT
  GCACGATTTA TTAAATATTT TCCTTCTATA AATATTTTTT CTGTTTTGCC TAACAAAGAA
  ACTTTGACAT TTTAGCCAAT GTTCAATAAT CGTTATGAGT ACATTTTAAA TATCAAAGTA
  GATATTCAAT ATTTATTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61103989	NES16605863	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50698707					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61103989	NES16605863	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:155236103 () rs orientation: forward

Symbol	Name	Function Class
Gm33266	predicted gene, 33266	1998 bp upstream
Rr375954	regulatory region 375954	1016 bp upstream
Rr587935	regulatory region 587935	543 bp proximal