rs50698393 SNP Detail

Summary

• ID
  rs50698393
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150130762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG CAGGATACAG GGAAGCCAGC
  G
  GGGATGGAGC ACCCAGATTG GAATG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148045814	ENSMUSSNP666962	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321427734	CHEV_4_149420414	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50698393					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150130762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	1794 bp proximal
Gm13067	predicted gene 13067	1890 bp upstream
Gm69230	predicted gene, 69230	821 bp downstream
Rr605155	regulatory region 605155	1400 bp proximal
Tssr40363	transcription start site region 40363	1886 bp upstream
Tssr40364	transcription start site region 40364	1973 bp upstream