rs50696119 SNP Detail

Summary

• ID
  rs50696119
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:42030616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAACATA GCAACTTTCT
  TACAGTTCAT TACCAAGAAT AAAAAATTTC AAATCTAATG AAGTGGCAGG AAAGACAGGA
  TGTCAATATG AAGGTGAAAT GAACCTTTAA ATGCAGAATT ATCAATAACT GTAGTATTGA
  TTTCGGGAGA GTAGTCATAG ATACAGTCAT TTATTTGTGA AGCTACTTAC TTTCTGTCAA
  W
  GATGGATTGC AGAAGCAGGC AAAGGCTATA TTTCACTTTA GAATTTTGGA TGTAAAGAGA
  TGAATTAATT ATCTAAATGA CCTTCTGTGG ACTGGGTTTC TGTACTTATA TTACTTTTAA
  CATCATGACA CTTTTTATAG CAGCATGTAC TAAATGGCAC CTTAAAATTT CCACATTGAA
  AGGAAACTCT TCTTAGTATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60395645	NES15895110	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50696119					SNP	T	T	T	T	T	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60395645	NES15895110	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:42030616 () rs orientation: forward

Symbol	Name	Function Class
Rr576014	regulatory region 576014	1250 bp distal
Rr576015	regulatory region 576015	1518 bp distal