rs50691780 SNP Detail

Summary

• ID
  rs50691780
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101469529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCCCCCC CCAAAATCTT
  TATTTTCATG CATACTTTGT GAAAACAAAT TGAGACAAAA TTAAATTCCT GTCCACCTGA
  GAGAGAAAGA CATCTTTCCC CACTGCTCTG GCATCTGTGT GCATGCTTTT AATCCCAAGA
  CACTTCTTAA CCTCTCACCC ACCATTCATC AATTTTCATC AGCTACAGTC ACTGGTCCCC
  R
  CAGTGCGCGG CAGAAGGCTG GCACGTAGAC CTGTAGAAAC AGGCTTCCAG TTTCAGAGCA
  GAAAAAAATG CATTGTACTT CTCCAGCCCT GCTGGGGCAG GGGGTGGGGT GGGGGAGTGG
  GGGTGATAGA ATCCTCCATT CCTTGTGGTG AATTTCCCCC AAAGTATGTG CCTGCATTTG
  CAATGGGGAG TCTTAAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147079103	ENSMUSSNP3740113	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss320429665	CHEV_2_101479341	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50691780					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101469529 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	427 bp proximal
Tssr25364	transcription start site region 25364	918 bp downstream
Tssr25365	transcription start site region 25365	1042 bp downstream