rs50689397 SNP Detail

Summary

• ID
  rs50689397
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140475288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG GCTATGTGAG CCTCAAAGGG
  T
  GCACGGAAGT GCCACCTGGA CCTGC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147711128	ENSMUSSNP5461672	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50689397					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140475288 () rs orientation: forward

Symbol	Name	Function Class
Gm69576	predicted gene, 69576	148 bp upstream
Padi4	peptidyl arginine deiminase, type IV	Intron
Rr603538	regulatory region 603538	within coordinates
Rr603539	regulatory region 603539	63 bp distal
Rr603540	regulatory region 603540	136 bp proximal