rs50688187 SNP Detail

Summary

• ID
  rs50688187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19528123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCATCACT CATGGCCATT
  ATTCTGTAAA TTTTCCATTC AATCATTTGC CTGAGTATAC TTTAATTATG TTTCCACAAT
  CAGGGTAGAG TAGGTACACA ACACTGATTC TGAGTGTTTT TCACTTGGTA CTATGCTACA
  AAGATTCTTC CCAGCTATTG TTCTTAAATT ACTCATAGTT GCTTGTACCA CAAAGATAAT
  Y
  ACCTCCATCT TTAGTGGGTA ACGCTGTAAG ATTAATATAA AGACTGAGTA TTTTTAGTAG
  AAGTTGTAGA TTTGTTCTTA TTTCCACCAA ATTCAAGATA CTACAAATCA TTTGAAAGGG
  AAGCTTTAAA AATGATGCAG CTCACAAACC TAGAGTTGGT TAGATGCAGA AATGAGATGC
  TGTGGAATGG TAAACACTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52626599	NES15515256	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50688187					SNP	T	T	C	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626599	NES15515256	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19528123 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	605 bp upstream
Trgj4	T cell receptor gamma joining 4	1741 bp downstream
Tssr118544	transcription start site region 118544	1992 bp downstream
Tssr118545	transcription start site region 118545	1966 bp downstream
Tssr118546	transcription start site region 118546	1884 bp downstream
Tssr118547	transcription start site region 118547	1811 bp downstream
Tssr118548	transcription start site region 118548	1792 bp downstream
Tssr118549	transcription start site region 118549	1214 bp downstream
Tssr118550	transcription start site region 118550	494 bp downstream
Tssr118551	transcription start site region 118551	247 bp upstream
Tssr121589	transcription start site region 121589	687 bp upstream
Tssr121590	transcription start site region 121590	371 bp downstream
Tssr121591	transcription start site region 121591	1236 bp downstream
Tssr121592	transcription start site region 121592	1816 bp downstream