rs50688006 SNP Detail

Summary

• ID
  rs50688006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129818706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGC TTTGAGGTTT CAAAAGCTCA
  Y
  ACTCAGGCCC TGGCTCAGAC CCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147454451	ENSMUSSNP779099	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50688006					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129818706 () rs orientation: forward

Symbol	Name	Function Class
Rr600383	regulatory region 600383	1353 bp distal
Rr600384	regulatory region 600384	within coordinates
Rr600385	regulatory region 600385	1528 bp proximal
Rr600386	regulatory region 600386	1883 bp proximal