rs50686877 SNP Detail

Summary

• ID
  rs50686877
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21862099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTTTCAT GGTCTAGTCA
  TAGAAGTCAG AAATAACAGC ACTTATACCA TATCAATTGA TCAGAGATGT AACAAGTCTT
  TCTGCCCAGA GCTAAGCTCA AGACATGTAG ACTTCATTTT ACCAGTAAAG AGAGGGGCAT
  ACCTCATGTG TTTACTCATG ACTACATGAG GGGCTAGGCA TGGTGATGTG TGCCTGAAAT
  S
  ATAGCACTTG GGAGGTAGAG ACAGGAACAC CTCTGTGCAT CCCAAAACAG CCTGGTCTAC
  GTAGTAAGTT CTAGGTTAAC CAAGGTTACA AGAGGAAGAG GAAAAAATGC AAAGCGGAAA
  GAAAGAAAGA TAAATGAAAG TGTGACACTG TGGAGAACTG TCATTGGTGT GTTGGCCATC
  TTTGGGAAGC ATGCACAGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134684618	ENSMUSSNP1569039	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50686877					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21862099 () rs orientation: forward

Symbol	Name	Function Class
Gm65770	predicted gene, 65770	within coordinates
Rr574150	regulatory region 574150	867 bp distal
Rr574151	regulatory region 574151	1786 bp proximal