rs50685722 SNP Detail

Summary

• ID
  rs50685722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60959056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGAGAT TTTGAGGCAT
  AGTGGCTATG AGTCCCAGGA ATCCAAGGCA AGGAGAGCTG AGTTTAAGGT CATCTGGGAA
  AAAGCAAGTC AGATCCAGGC ATGGCAGCAC ACACCTTTAA TCTGATCCAC ACCTTCTGCT
  GGAGAACTAC AGAAGGACAT TGGAAGAAGG AAGACTCTCT CTTCTTTACC TGCTTGCTTT
  R
  TGGGACTGAG CAAGTGCTAG ATCCTTGGAC TTCATTCACA GCTGCTGCTG ATCATTGTTA
  GGGAGTTGGA CTGCAGTCAT CAACAAATTC CTTTACTATA GAGAGAATGC CCATATGTTC
  TGTGACTCTA GAGAACCCTG ACTAACACAT TTCATAAGGA AGGAATTATC ATTAATAGTA
  TTTACATTAT CTGTCTTAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss135222435	ENSMUSSNP4969659	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs50685722					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60959056 () rs orientation: forward

Symbol	Name	Function Class
Rr577470	regulatory region 577470	1005 bp distal