rs50684666 SNP Detail

Summary

• ID
  rs50684666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141890547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTG CATACAATAC ACATAACACG
  Y
  AAGTAAAAAT GAAATCATTA AAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147750300	ENSMUSSNP2100202	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321393264	CHEV_4_141719151	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50684666					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141890547 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604012	regulatory region 604012			806 bp distal
Rr604013	regulatory region 604013			919 bp distal
Rr604014	regulatory region 604014			858 bp distal
Rr604015	regulatory region 604015			within coordinates
Rr604016	regulatory region 604016			633 bp proximal
Tssr40125	transcription start site region 40125			1380 bp upstream