rs50684053 SNP Detail

Summary

• ID
  rs50684053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65836114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCACATG CACACATTTT
  TTTTTAATTA AAAAAATTAA AACAAACTAG ACAAGGTTGC GTCTTGCTGT ATCTACTTCA
  GAATTAGTTG ACATTTTATG CTTCCCCCTA AGGAAACAAA CAATACTGCT CTTATTTTTT
  CCTTGTAGAT TTAACATCCC CTTCACTTTC TCAGAATGAA ATTGAGCGCC AGTTATCTGT
  R
  CAGTAAGAAA GCTCCTCATA GTGTGCAGAG TCCAGCAAGG ACTTTGCCCT TCTTCCTGGT
  TTTCCTCTCT CCTGGGTGTG TGTGCCCCTG AGAGAAGGGT AGGGGGAGAA TGACACTCAG
  GAGAGGGAAA GTGGGGGCAG GAGGCACACA CACACACACA CACAGTGCCG ACCTATTGTT
  CCTGAGGTGC TGGCTACACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60417552	NES15922212	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50684053					SNP	A	A	A	A	A	A	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417552	NES15922212	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65836114 () rs orientation: forward

Symbol	Name	Function Class
Gm35039	predicted gene, 35039	405 bp upstream
Gm65138	predicted gene, 65138	within coordinates
Rr577758	regulatory region 577758	834 bp distal
Rr577759	regulatory region 577759	538 bp distal
Rr577760	regulatory region 577760	within coordinates
Rr577761	regulatory region 577761	674 bp proximal
Rr577762	regulatory region 577762	975 bp proximal
Rr577763	regulatory region 577763	1768 bp proximal
Tssr33471	transcription start site region 33471	662 bp downstream
Tssr33472	transcription start site region 33472	722 bp downstream