rs50683619 SNP Detail

Summary

• ID
  rs50683619
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141295071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATATAAC TAGATGTGCG
  GGAAGAGATG TTGAATTTAA TCTATTTTTG GTTGTGTTTT TCTTTAACTT ATGAAGAAAC
  TGTTATGTCC TAGAAGTGGA TGGTGGATGT GATACATAGG GTAAGAGAGG GACTTTGGGA
  ATCTCTTCTC TCTTTAGCTA TATGCATGAC CCTTTGATTC TCATACCATC CTACAAAAAT
  R
  AGCTGGAAAA AAAAATTCCT CTGAAGTTTA AAGATGGTAC TCAAGGGTAA AAAGGCTTGT
  CTACCTGGAG CTTGAGAAGC CTATTGAGAA AACTCACCTA GAAAGGAGCT TCATAATTGT
  GGCTGATGCA GGGTAATTAA TGTGGACATG GGGAAAGAGG GGTTTCCATA TGAGAAATCC
  ATGTCTGGTA ATTGGGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61092035	NES16588677	PERLEGEN	MM_PANEL2	f	SNP		A	A	A		A			A	G		A
ss136005330	ENSMUSSNP3570246	ENSEMBL	ENSEMBL_Sanger	f	SNP	A				A			G
ss320993574	CHEV_3_141252274	CHEVERUD	SCREENING_POP	f	SNP							G				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50683619					SNP	A	A	A	A	A	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092035	NES16588677	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141295071 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			122 bp proximal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant