rs50683120 SNP Detail

Summary

• ID
  rs50683120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141025543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCTGCAAT AAATACCACA
  TTCCAGGGCC AATTTATGAG ACTCACTAGG GACCTTTCCC CCTTAGCATC AGTCACCCAG
  AGCCAGTTAG GAGAGGGGAA GGGTGTGCCA GCGAGTGAGT GGGTGACTAA AGAGACCGCC
  TCCTGCCACT GCATAAACCT CTTCCTCAGC CCAGCCTCTG GCCATGGTGC CTGCTGTAGA
  Y
  GGGCAGGCTA CAACACAGCC TGTGCTCGGC CCAGACCCCA GCACACATCT CAGCATATGG
  CCCTAACATG GAGGCCTGAC AGCATCCTGG CATCTAGGGA GGGTGGAGTC TTTGGGCTAT
  GCATAAAGTC CATACATGAC ACAAAGAGAA ACCTCCAGCG GTACACAGAA ACTAGTATTG
  GGAGACCTGG CCAACACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147731063	ENSMUSSNP2627158	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50683120					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141025543 () rs orientation: forward

Symbol	Name	Function Class
Rr603719	regulatory region 603719	1656 bp distal
Rr603720	regulatory region 603720	within coordinates
Rr603721	regulatory region 603721	1038 bp proximal
Tssr40046	transcription start site region 40046	1965 bp downstream