rs50682684 SNP Detail

Summary

• ID
  rs50682684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52813147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTACGCTC TGAAGCTGGG
  CTGAGACCCA AATCCAAGTC CAAATCTGAT CCAAGTTCCC ATGCCTAAGC GGGCCATTTA
  AGAAGAATCA TTATTGTTCC GTGTTTAAAC AAAGGCGCTA GTACCAGAAA GCCCTAAATC
  CTGGCTAACC AGCTCTGCAC ACTGGCTCTT CCATAAAAGG GATGCTGCTT CAGAGGAGAA
  Y
  GCATTTCCAT CTCTCAGATT CCTCTCTGGG AGTATCACCC CCTTCATCTT GGTCCCTTCG
  GGGTGTTTGA CATTTATCGT AATGGTGCCG CTTTGCTCCA AGAGCACTTT CGGGTTTTAA
  AAATACTTCA CATATTCTCA GTGATGGCAA ACCTTTGTCC TTTTAAAAGA TCCAAAAATT
  ACTTGAAGCC CAGTCAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135179431	ENSMUSSNP4172881	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320765862	CHEV_3_52709648	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50682684					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52813147 () rs orientation: forward

Symbol	Name	Function Class
Gm20750	predicted gene, 20750	1030 bp downstream
Rr576600	regulatory region 576600	1539 bp proximal
Rr576601	regulatory region 576601	1628 bp proximal