rs50678684 SNP Detail

Summary

• ID
  rs50678684
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132484658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGGCTGC TTCCAGTGTT
  CCAAGTTATC CTTGGCGGAT GGCTGCTCTT GCTTTTCCCT CTCTTGCCCA GCAGGGCGTG
  CGCTTGATTG GAGGAGGGAC GCACCAGTGA GCGCTGGAAT AGCTTGTAGG TCTCTGTGGA
  AACCGCATCT GTGTTGCAAG GTGCTGTGTT GGAGTTCCCC GACTTTTCGA AAGAAATTCA
  K
  AAGTACTTAG GAGCAAAATG ATAGGATCTT CGAGGTACGC TTTAAAGTTT TCTAGTCGAA
  TTGAAGGCAT TTCGGTTCAG TCAGCCTCCA GAAAATGCAG GAAGCACCAT CGACTTACTG
  TCTTCTCCTT GCAGAGCTGC AACACGGATG GATGAATGAA TTAGCTACCT GTGGCAACCA
  AAGAGCCTTA AAAGCTAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147477900	ENSMUSSNP2159234	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss321336224	CHEV_4_132313262	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50678684					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132484658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	16 bp distal
Gm70165	predicted gene, 70165	855 bp upstream
Rr601063	regulatory region 601063	106 bp distal
Rr601064	regulatory region 601064	within coordinates
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	100 bp upstream
Tssr43702	transcription start site region 43702	240 bp upstream
Tssr43703	transcription start site region 43703	195 bp upstream
Tssr43704	transcription start site region 43704	160 bp upstream
Tssr43705	transcription start site region 43705	107 bp upstream
Tssr43706	transcription start site region 43706	88 bp upstream