rs50665373 SNP Detail

Summary

• ID
  rs50665373
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGCCTCAT AACTTTGAGT
  TTTAATCTAA CATCACAAAC TAATATTGGC ACATCCCAAA GTCCCAGGTC TAAATTAGAC
  TCAAGTATAT TATGCTTTGC CATTCGTAGC TCAGTGATTT CATGCAAGTG ACTTAAAATC
  TGAATCTTTT TGATTCCAGA ATTTATAGAA AACGCTACCG ATTGTACGTC TTGACTAATG
  S
  TTAAACTTAC TTTTATGTGG GTATCACCTT TGAAGCTGTA CACCATAGTG ATTAGGACTA
  CCGTCTGTGG ATCTGATAAT CATAGGCTCA AACCTCAGAG CTGTGCCCCT CACTTGTGTG
  ACCTTAGACT CTCAAGGACT CCTTTTCCCT GTTTGTGGAA TAGAGACACT CGGGTCCTGC
  CTGTATGCTC TTGGGGAGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147115189	ENSMUSSNP2216991	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50665373					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	740 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	986 bp upstream
Rr561703	regulatory region 561703	605 bp proximal
Rr561704	regulatory region 561704	1877 bp proximal
Tssr19094	transcription start site region 19094	1019 bp upstream
Tssr19095	transcription start site region 19095	1073 bp upstream
Tssr19096	transcription start site region 19096	1091 bp upstream
Tssr19097	transcription start site region 19097	1112 bp upstream