rs50661714 SNP Detail

Summary

• ID
  rs50661714
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54622837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGAGCCT ACTCCCTCGT
  CCTAGCCCAG TGTAAATATT GTCAATATCC CTGAAGCAGC ACCAAGAGCT CTCCACAATG
  CAAGAGACAG ATCGAGGGAG GGCTGCAGGC CATTACCACG CCAGCCCAGA GTGTATTTCT
  CATAGCCTTT TTATACTTGA GTACTGTGAG AAGCAGAGCC ACAAGCTAAC AGAAACAATT
  Y
  GCTGAGATAT ACACACAAGA CATTTGTTCC CATCCAAAAG CCTCTCTATT CCTTCCACCA
  AGGTCAATAG AATCTTTAGC CCCTCGCCTT AAACCCCAAG TGCACCTCCT CTTATCCTTC
  CATGCCCCAG CAGGCTGGGA AATCTGCCAG CAGACACTGA CCTTCCTTAA CTCTGCTTGG
  CAGGCAGACT TTTCTCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149030218	ENSMUSSNP413919	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50661714					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54622837 () rs orientation: forward

Symbol	Name	Function Class
Rr403785	regulatory region 403785	857 bp upstream
Rr480227	regulatory region 480227	546 bp proximal
Rr480228	regulatory region 480228	644 bp proximal
Rr480229	regulatory region 480229	1264 bp proximal