rs50657962 SNP Detail

Summary

• ID
  rs50657962
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148942122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACTAATGG AGCTAAGAGT CCTCTTGTGG CAGCCCAAGG
  AACCCCAATC CTTACAGCCA GGTAACTCCC GCAAGCATCT TTCTTCCCGG TATGGGAATC
  M
  CACTGGAACT TCAGGGCGTG CAGTCCAGAG TCCCAGCATC CTGTATGTGG ATTGTGATGC
  TGGCCAGCTT TTGTATGGCA GCTCTATTAC CCTCTGTAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148021606	ENSMUSSNP2844958	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321423416	CHEV_4_148231774	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50657962					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148942122 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	Intron
Rr1824	regulatory region 1824	1806 bp upstream
Rr407036	regulatory region 407036	within coordinates
Rr604775	regulatory region 604775	65 bp proximal
Rr604776	regulatory region 604776	1584 bp proximal