rs50656219 SNP Detail

Summary

• ID
  rs50656219
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83808509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGA GCGTCGGACG GCCTGGGCCC
  S
  GGCCGCGCTG GGAAGGGGCT GTGCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133350483	ENSMUSSNP986959	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321844844	CHEV_6_83781521	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50656219					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83808509 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17619	CpG island 17619	within coordinates
Gm68055	predicted gene, 68055	within coordinates
Paip2b	poly(A) binding protein interacting protein 2B	Intron
Rr399726	regulatory region 399726	193 bp upstream
Rr632951	regulatory region 632951	244 bp distal
Rr632952	regulatory region 632952	within coordinates
Rr632953	regulatory region 632953	83 bp distal
Rr632954	regulatory region 632954	204 bp proximal
Rr632955	regulatory region 632955	224 bp proximal
Tssr61712	transcription start site region 61712	156 bp downstream
Tssr61713	transcription start site region 61713	178 bp downstream
Tssr61714	transcription start site region 61714	209 bp downstream