rs50656153 SNP Detail

Summary

• ID
  rs50656153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102378202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCAAAGTT GTGTGCCACC
  ACCAACTGGC TTCAATGCCA TTCTTGATGC TTGCTTATAC AAATGTCTCC TGGTTGGAGA
  AGTTGACAAT GAGGGAGAAA GCTCATACTG AGTTTTCTAA AGGTCAGTCT CAGGACAGAC
  AATGATGATG CCTAATATTT ATTTACAGCA GCCGTGTGTG CTAGGCGTGC GGTATCTTTG
  Y
  ATGAATAATC TCATTCCATC TTTCCAAGAG TTTCTAAAAC AGGTTTGATC ATTTTGCCTA
  CTGTATACTG AAGACAAGCT GAAAGAATTG AGTAACTCAC TCAATGTCAT GTAGCTAGAA
  AGTGAAGCAA GGACTTGAAC ACAGGTCATT GAATGCTGAG TTCTCCCAGT CTCTTCAACT
  GCTCTTACCC ATTCCCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147115141	ENSMUSSNP3737694	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320438710	CHEV_2_102388014	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50656153					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102378202 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	1909 bp proximal
Rr561703	regulatory region 561703	1774 bp proximal