rs50648864 SNP Detail

Summary

• ID
  rs50648864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118996632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC TCCTGAAAAC TGTCTATAAC
  Y
  TTCAGAAGTT AGCCTTGACA AGGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147324305	ENSMUSSNP5601386	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320473931	CHEV_2_118991887	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50648864					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118996632 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	1171 bp proximal
Gchfr	GTP cyclohydrolase I feedback regulator	1637 bp upstream
Rr563425	regulatory region 563425	537 bp distal
Rr563426	regulatory region 563426	1132 bp proximal
Rr563427	regulatory region 563427	1464 bp proximal
Rr563428	regulatory region 563428	1633 bp proximal
Tssr19604	transcription start site region 19604	1607 bp upstream
Tssr19605	transcription start site region 19605	1631 bp upstream