rs50648852 SNP Detail

Summary

• ID
  rs50648852
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57878616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTATAG CATTGGAAAT
  GTAAATGAGT TAAATACCTA ATAAAAAATG GAAAAAAAAA AAAAAGAAAA AAAAAAAAAA
  AAAGAAAGTT GGCTAGCATG CTCTACTCTT GGTATGCACT ATTCACATCT CTGAGAGCAG
  GCGAGATGCC TGCTTTAAAG TTCTTCAGGC CCTATAGCAG ATATCAAACC CTGAACACAC
  R
  GCAGTGATAT TTCCAGGGGA AGTTCCCTCG TGTCCCACTT GAGGCTAATA CACTATTGTC
  TGCTGGAACT TAGGGCCCTG CTTGTGGCCA GGAAGTGGAC TTCTTTGGTT TGTCTCTCAC
  ACACCTACCA CCTATGTGTG AGTTAGAACC TAGTTGTGAG TTAAGGGAAG GAAATCTGTC
  TACTGCTCCT GCTCTTGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135205260	ENSMUSSNP5894928	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50648852					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57878616 () rs orientation: forward

Symbol	Name	Function Class
Gm32753	predicted gene, 32753	within coordinates
Rr577179	regulatory region 577179	1309 bp proximal