rs50647002 SNP Detail

Summary

• ID
  rs50647002
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101260501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGAGTCC AGAAGATGAC
  ACAGAGGTGG CTGCAGAAGC ACATGGCTGG GACAGGAGTT CAGTCACAGC CAGCATCCTA
  CAGGACAAAG GCCTCGTGCT GATCACTGGT AGGACAAACT CACAACCTCC TGTAACTCCA
  GCTCATGGCA TCCAGCGCCC TGTCTGGCCT CTGGGTACCT GAAGGCACAT GGCATACAAA
  S
  ATACATACAT ACACATCAAT AAAAATATTA TTTTTACCTT TGAGGCAGAG TCTCACTACA
  TAGCCCTGGC TGACTAGGAA CTCTATATGT AGACCAGGCT GGCCTAGAAT TCACAGAGAT
  CCACCTGCTT CCATCTCTTG AGTGCTTGAA AAATACATCT TAAAAAAGAA GACCTATCCT
  TGTTCTGAGT AGCTCCATAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss135546709	ENSMUSSNP2978526	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs50647002					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101260501 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	within coordinates
Rr582017	regulatory region 582017	1033 bp proximal
Rr582018	regulatory region 582018	1271 bp proximal