rs50646700 SNP Detail

Summary

• ID
  rs50646700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52169197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAAGAGG TGACCTCCTA
  TGGTCCCAAC TAAGCATACA CTTGGGGGAG CACAACCATA CATAAAACTG GCTTATTCTA
  TAGCTGTTTC TGCTCTCACA GGAGACTGAT AGAAGACAGG CACATCTTCA CTGAAGGTGG
  CTTAATGAAA TCTATGAACA TACATTTCTA ATCCCACTCC ATTGCCAAGG CACGGTATTG
  Y
  ATTGTTTTAG CATACTTTAA AAATATGTCT GATATTTATG CTTACTGGAC AGTAGAGGGG
  GACCCAATCT GGTTTCCTTT GTGGCCATGT TTGAAACAGA GAGGAACCAC AAGAATTGTT
  TTGTTTTCTT TTAAATCTTG TCGGGTGCCT CAAGACAGTG GCCCTGGCTT TGACTCCAGC
  AGCATGTTGG CCGGGCTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss60410251	NES15916417	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs50646700					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410251	NES15916417	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52169197 () rs orientation: forward

Symbol	Name	Function Class
Rr397665	regulatory region 397665	611 bp upstream
Rr576485	regulatory region 576485	578 bp proximal
Rr576486	regulatory region 576486	804 bp proximal