rs50645219 SNP Detail

Summary

• ID
  rs50645219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148142946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCT GCCTGCCTCC TGCCAGAGCA
  R
  GCTCCCACCT GCGTGCATAA TGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147990957	ENSMUSSNP1251002	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A		A
ss321416735	CHEV_4_147432598	CHEVERUD	SCREENING_POP	f	SNP				A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50645219					SNP	A	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148142946 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm13201	predicted gene 13201			within coordinates
Gm66468	predicted gene, 66468			within coordinates
Mthfr	methylenetetrahydrofolate reductase			mRNA-UTR
				Noncoding-Transcript-Variant
Rr604566	regulatory region 604566			1151 bp distal
Rr604567	regulatory region 604567			741 bp distal
Rr604568	regulatory region 604568			674 bp proximal
Rr604569	regulatory region 604569			1734 bp proximal