rs50643503 SNP Detail

Summary

• ID
  rs50643503
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148992003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGG CCCAGTGTAT AATAAGGTCA
  M
  GCTGCTGTCC AAGGAAACAA GAGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148022744	ENSMUSSNP491294	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321423668	CHEV_4_148281655	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50643503					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148992003 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	Intron
Rr604792	regulatory region 604792	1799 bp distal
Rr604793	regulatory region 604793	327 bp distal
Rr604794	regulatory region 604794	474 bp proximal
Rr604795	regulatory region 604795	733 bp proximal