rs50642716 SNP Detail

Summary

• ID
  rs50642716
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:39008727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCACAGA TTGCATGCTT
  ACCAAGAAGC GGGTAAGAGT AAATCCAGCA ATTTCTAATT TTTCCTGGCT AAAATCTGCC
  CCCTTAGTTA CAAGAGATGT AAGACACCCA AAGAGAAACA TGGAAAGGCC TCTGCAATAC
  ATACACCCCA CTACAACGTC AAAATTCACA TCTTTCAAAA CTGTGTAATA ACAAACTAAG
  S
  TGTATCCTGG CGGCTGAATA AGGTATTCTA ACCAATCAAT CAATTATTGT GGCTCTTATC
  ATGTTATATA TCATATTACA TATCATGACA AATTAATAGC AAGTATAATT TAACTTTTGC
  TAAATGAAGA TTAAAGGTTT TGTAGTTTCT CAGAATTTCT GTGGAAAATA TTAACTTCAT
  TAAAGCATTA AAGTTAGTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52232538	NES15203480	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50642716					SNP	C	C	C	C	C	C	G	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52232538	NES15203480	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:39008727 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fam229b	family with sequence similarity 229, member B			Intron
				Noncoding-Transcript-Variant
Rr429936	regulatory region 429936			611 bp proximal
Rr429937	regulatory region 429937			1107 bp proximal
Tssr92973	transcription start site region 92973			1227 bp upstream
Tssr92974	transcription start site region 92974			1250 bp upstream
Tssr92975	transcription start site region 92975			1319 bp upstream
Tssr97329	transcription start site region 97329			1124 bp downstream
Tssr97330	transcription start site region 97330			1183 bp downstream
Tube1	tubulin, epsilon 1			1245 bp upstream