rs50642056 SNP Detail

Summary

• ID
  rs50642056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172345698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGG AGCGATGCAT CCGTGCTCTT
  Y
  CAAAGGACCC AGGTTCTATT TGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011752	PARCsnp_1.19954	PARC_SEQ	INBRED	f	SNP			C	T
ss120014637	PARCsnp_1.10006	PARC_SEQ	INBRED	f	SNP			C	T
ss146194204	ENSMUSSNP2363374	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320125839	CHEV_1_174448262	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs50642056					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172345698 () rs orientation: forward

Symbol	Name	Function Class
Gm70635	predicted gene, 70635	within coordinates
Rr372460	regulatory region 372460	within coordinates
Rr423607	regulatory region 423607	74 bp proximal