rs50640873 SNP Detail

Summary

• ID
  rs50640873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104850057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATACTCA ACAACAAAAG
  AGTTAGGGAG CAAAGCAGAG AATATTCGTC TTTCAAATCC TGGGTGAGTG CCGCATCCTA
  AGTGAGTGGC TGCAGCAGTG CCCAGTGATA CCCAGGCATG GAAGGAGGGG AACTTCAGAT
  CTGTTAGCTG AAACCTGTCA ATCATCCAAA GATAAAGACC ACTCCCGACA GGTCAGCAAC
  Y
  GGGCCGCATT CAGCCTTGTC AAGCACTGCT TGTTCTTCCA GCACCCCTCT TAGGATCACT
  CCTGGAACCA AAGGTGTCCT GCTTTCTGGT CTGTTAAGAG TGTAAAACAG CAGATGATAA
  AAAGCAAGCC CAGTGACGGT GCATACCTCG GGGCAGGTCC AGGAGGCTGG CCAGTCACTC
  AGAACACATA GGATGCACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60431364	NES15935772	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50640873					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431364	NES15935772	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104850057 () rs orientation: forward

Symbol	Name	Function Class
Gm65748	predicted gene, 65748	within coordinates
Rr582632	regulatory region 582632	1915 bp distal
Rr582633	regulatory region 582633	1671 bp distal
Rr582634	regulatory region 582634	562 bp proximal