rs50639315 SNP Detail

Summary

• ID
  rs50639315
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59802568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCATCCAC TTTAGAAGTG
  GTGGCGTTAT TTTGAGGCAG GGTTTGGGAT GCCATATAGA ATAAAGCTAT GATTGTATTA
  AACGCCAGCG GAGGATAAGC AGCTAATACA AACACCAAGC AGTGTGCCTA AGCACCTGCT
  GTACCAAGGG AGAAGATGGG ACAATGCCTT GTCGGTACTG AGCACTCTCA TGCAGTCCTG
  S
  CAGAGTTGCC AGTAAGGGTG ACATGGTTCT TCTTTGGCAA AATACTAAAT TGTGGGGCCT
  GGGGCCCTAT CTCCTGATAG GTCCCAGGCT TAGTGCCTGC CACTCCGTGT GGATGGGAAA
  GGGCCCATGC GACTGGGTCT TGCTTCAAAG GTGGATAGTT TATTCTGGGG CGAGTATGTC
  CGGCCATGTC CTGAGGAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146403187	ENSMUSSNP3218220	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50639315					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59802568 () rs orientation: forward

Symbol	Name	Function Class
Rr398296	regulatory region 398296	838 bp upstream
Rr593142	regulatory region 593142	within coordinates