rs50639123 SNP Detail

Summary

• ID
  rs50639123
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134166039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTATGTA TATGAGTACA
  CTGTAGCTGT CTTCAGACAC ACCAGAAGAG AACATCAGAT CCTATTGCAG ATGGTTGTGA
  GCCACCATGT GGTTGCTGGG AATTGAACTC AGGACCTCTG GAAGAGCAGC AGTCAGTGCT
  CTTAACCACT GAGCCATCTC TCCAGCCCAG GACATGTATG CTAAAGACCA GATACTGATA
  Y
  AGACTTGCAT TCTTTTTAAG ATTTTATTTT TATTATCTTT ACTTATGAGT CTGTATAGAT
  GGCTGTGCAT GCAGAAATCC TTAGACCCCC TGAAAAAGGA TGTCAGATTG TCCTGCATTC
  AGACATAAAG ATCGCTGTGA GCCATACAAC ATGGGTGCTG GGAACTGAAC CCAGGGCCTT
  CGTAAGAGCA GCAAACCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147530362	ENSMUSSNP6335689	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss321347841	CHEV_4_133994643	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50639123					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134166039 () rs orientation: forward

Symbol	Name	Function Class
Gm30453	predicted gene, 30453	within coordinates
Rr601675	regulatory region 601675	1725 bp distal
Rr601676	regulatory region 601676	465 bp proximal