rs50637948 SNP Detail

Summary

• ID
  rs50637948
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:143005554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTGGGAG GCCCCTGGAG
  GAATGTTGCT CTGTTTCGGA GGAGCCTTCT CTGTGCAGCT GGCCCTGTTC CAGTTGCCAA
  CGGATGGCTT TAGATGAGCT ACCTAGCGTA GGCATCCTTA AAACAAAAAA CCAAAAAAAA
  AAAAAAAAAA AAAAAAAAAT CTCAGGAAAA GCCTTAAAAC CTTCAAAACT CAGTGCATAC
  M
  AATAGTAGAC CTCCTCTTGT GGTCATTTGC TACTGTGGGC TGAGGGCAGG GACTGTGACT
  GCGGAGTAGA CGGATGTTTA ATGTCCATTT TTCAGACAAA TAATCCCTAC TTAAAAGCTA
  AGCACCCCCA GTGAAATAGA CACTTCTTCA GTGGCGTTGC CACTGGAAAG ATACCCATAC
  TTCCACAAGC AAACCCTCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147778545	ENSMUSSNP3490188	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
ss321403683	CHEV_4_142868887	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50637948					SNP	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143005554 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	Intron
Rr604183	regulatory region 604183	within coordinates
Rr604184	regulatory region 604184	509 bp proximal
Rr604185	regulatory region 604185	1397 bp proximal
Tssr44446	transcription start site region 44446	69 bp upstream