rs50636218 SNP Detail

Summary

• ID
  rs50636218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121570179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTTAAGCC GCCTACCTGC CACTGAATAT CTTCTGAATG
  AATGTAACTA TCTGAACTCA AAACAGCAGC AAATAAAGAA AAACAGCTTT TAGAAAACAT
  Y
  CGTATTCCAA ATCAAAGGTC AACAAACTAT GATCAACAAA TTCTAGCACG CCACTTATGT
  TGCAAATCAA TTTAGCAGAG CCAAACCACT CATGTATGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135729084	ENSMUSSNP1363688	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320905778	CHEV_3_121479448	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50636218					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121570179 () rs orientation: forward

Symbol	Name	Function Class
Abcd3	ATP-binding cassette, sub-family D member 3	Intron
Rr584166	regulatory region 584166	1378 bp proximal
Rr584167	regulatory region 584167	1676 bp proximal