rs50625738 SNP Detail

Summary

• ID
  rs50625738
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65832872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTTTCAG GAACTTGAGT
  CAGACAAGCT TGTTCTTAGG TATCAAGATG GATGCCTAGC ACAGAATGGA GTTTCTTTAG
  TCACCACAGC TGGGCTGGGC CCCTGAATAG AATGTGCTGT GGGCACATGC TACCTCTTTT
  CAGCTTTGAG AGATCAGAGG GCGTTAGAGC TCCCTCTTAA CGTCCTATCA CAGCTTAGAA
  W
  TTGCCTTGTT CTCTTTTTGT CTTGATTCCC AAGGCTCAGT TAGTTAGACA GTTACTTAGT
  TAATTATTAC TAAAGTTTTG AGTCAGGGTT TCACCCCTAT CACAGGTGTT GGTCTTGGAA
  ATTCATCAGT AGCCCAAGCT GACCTTGAAC ACATGCCAGC GATGAGTTTA ACACTTCTCA
  TATCCTGGGT CCCTCTGGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
ss60417569	NES15922281	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
rs50625738					SNP	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417569	NES15922281	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65832872 () rs orientation: forward

Symbol	Name	Function Class
Gm35039	predicted gene, 35039	within coordinates
Gm65138	predicted gene, 65138	within coordinates
Rr577757	regulatory region 577757	within coordinates
Rr577758	regulatory region 577758	1917 bp proximal
Tssr33470	transcription start site region 33470	458 bp downstream