rs50623970 SNP Detail

Summary

• ID
  rs50623970
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156147222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCAGAGAA CCTCCTGCCT TCACAGTTGC TATTCACACC
  AATCCTAGGG AGTCAGCATG TTCCACACAA ACCCAGAAAG CGCCGGGCCG GGCGTGGTGG
  Y
  GCACGCCTTT AATCCCAGCA CTTGGGAGGC AGAGGCAGGC GGATTTCTGA GTTCGAGGCC
  AGCCTGGTCT ACAAAGTGAG TTCCAGGACA GCCAGGGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148125254	ENSMUSSNP6887680	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321445023	CHEV_4_155436874	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50623970					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156147222 () rs orientation: forward

Symbol	Name	Function Class
Gm52714	predicted gene, 52714	1509 bp upstream
Rr377474	regulatory region 377474	1123 bp upstream
Rr606657	regulatory region 606657	1107 bp proximal
Rr606658	regulatory region 606658	1592 bp proximal
Tssr40789	transcription start site region 40789	1574 bp upstream