rs50621661 SNP Detail

Summary

• ID
  rs50621661
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87655080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATT GCAAGGAAAA CGGGGTCCTG
  G
  CCCTCTTTAA TAACAAAAGC ATCGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135467939	ENSMUSSNP1075686	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320835315	CHEV_3_87551695	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50621661					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87655080 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	Intron
Pear1	platelet endothelial aggregation receptor 1	1324 bp downstream
Rr579535	regulatory region 579535	840 bp proximal
Rr579536	regulatory region 579536	1221 bp proximal
Rr579537	regulatory region 579537	1429 bp proximal
Tssr33946	transcription start site region 33946	760 bp downstream
Tssr33947	transcription start site region 33947	783 bp downstream
Tssr33948	transcription start site region 33948	804 bp downstream
Tssr33949	transcription start site region 33949	826 bp downstream
Tssr33950	transcription start site region 33950	846 bp downstream