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rs50621661 SNP Detail
Summary
  • ID
    rs50621661
  • Variation Type
    SNP
  • Alleles
    G
Genome Location and Flanking Sequence
  • Location
    Chr3:87655080 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CCATT GCAAGGAAAA CGGGGTCCTG
    G
    CCCTCTTTAA TAACAAAAGC ATCGA                                      
    
    G = G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
LG/J
SM/J
ss135467939 ENSMUSSNP1075686 ENSEMBL ENSEMBL_Sanger f SNP G G
ss320835315 CHEV_3_87551695 CHEVERUD SCREENING_POP f SNP G G
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
LG/J
SM/J
rs50621661 SNP G G G G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:87655080 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Lrrc71 leucine rich repeat containing 71 Intron
Pear1 platelet endothelial aggregation receptor 1 1324 bp downstream
Rr579535 regulatory region 579535 840 bp proximal
Rr579536 regulatory region 579536 1221 bp proximal
Rr579537 regulatory region 579537 1429 bp proximal
Tssr33946 transcription start site region 33946 760 bp downstream
Tssr33947 transcription start site region 33947 783 bp downstream
Tssr33948 transcription start site region 33948 804 bp downstream
Tssr33949 transcription start site region 33949 826 bp downstream
Tssr33950 transcription start site region 33950 846 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory